Researchers uncover evidence of 'hidden state' involving common ion
31P NMR results for phosphate-containing species. (A) 1D NMR spectra from 10 mM sample in (D) taken at every 10 K showing line broadening in orthophosphate. (B) Linewidths for orthophosphate, pyrophosphate, ADP, and ATP as a function of temperature showing monotonic increase with temperature. Solid lines are quadratic fits to data to guide the eye. (C) R1 and R2 curves as a function of molecular tumbling rate from Bloembergen–Purcell–Pound theory. Cartoons illustrate the approximate locations of ionic phosphate, ADP, and a standard protein based on tumbling rates. (D) R2 as extracted from a CPMG pulse sequence and from FWHM for 10 mM and 100 mM monobasic sodium orthophosphate pH 4.5 as a function of temperature, showing monotonic increase in R2 in each case. Solid lines are quadratic fits to data to guide the eye. R1 for 10 mM, 100 mM, monobasic sodium orthophosphate pH 4.5 as a function of temperature showing different curve shapes as a function of concentration. Solid lines are cubic fits to data to guide the eye. Credit: Proceedings of the National Academy of Sciences (2022). DOI: 10.1073/pnas.2206765120

While conducting an otherwise straightforward investigation into the assembly mechanism of calcium-phosphate clusters, researchers at UC Santa Barbara and NYU made a surprising discovery.

The recent uncovered behavior has implications for understanding the role of phosphate species in biocatalysis, cellular energy balance and the formation of biomaterials. The findings are published in a journal.

Songi Han is a chemistry professor at the University of California, Santa Barbara. Four oxygen atoms surround a single phosphorus atom. Han said that it's in the blood and the Serum. It's on our genes in every Biologist's buffer. She said that it's a structural part of our bones.

When bound with calcium, phosphates form small clusters on their way towards forming mineral deposits. Matthew Helgeson at UCSB and Alexej Jerschow at NYU were preparing to study and characterize in hopes of uncovering quantum behaviors in the proposed clusters. In order to set up the control experiments, the researchers had to use nuclear magnetic resonance andcryo- TEM.

The results of the data collected by the UCSB and NYU students were not in line with expectations. Han said that the spectrum for 31P is supposed to narrow with increasing temperatures.

She said that higher temperatures cause the molecule to tumble faster. The average out of the anisotropic interactions is based on the relative orientations of the small molecule. A narrowing of resonances would be achieved.

She said they were expecting a simple signal with a peak that narrowed with higher temperatures. We were surprised to find that the spectrum that we measured was not what we expected.

The team was set on a new path after this unexpected result. Is the conclusion after a year of eliminating one hypothesis? cluster formation under a wide range of biological conditions was the reason why they had not been observed before. The broadening of the signal instead of a sharp peak was suggested by the measurements.

Researchers uncover evidence of 'hidden state' involving common ion
Evidence of phosphate assemblies from TEM and MD simulations. (A and B) TEM images of phosphate assemblies (yellow arrows) after heating phosphate solutions show droplet-like features forming at 25 to 50 nm in size. Samples were from different sources and prepared on different days. (A) 100 mM potassium ADP heated to 343 K before vitrification. (B) 100 mM sodium ADP heated to 343 K before vitrification. (C) Cluster size distributions from MD simulations at 343 K show the fraction, P(N), of phosphate ions in a cluster of size Nclust. The insets show snapshots of phosphate assemblies (red and white) and sodium ions (blue) from the simulations. The cluster size distribution and snapshots show that HPO42− strongly assembles in contrast to H2PO4. When H2PO4 is mixed with HPO42−, the latter induces clustering of H2PO4. In this mixed system, the HPO42− ions are grayed out to highlight the clustering of H2PO4. Simulation snapshots are visualized using Visual Molecular Dynamics. Credit: Proceedings of the National Academy of Sciences (2022). DOI: 10.1073/pnas.2206765120

According to co-lead author Mesopotamia Nowotarski, as the temperature increased, the number of these assembled states increased as well.

She said that the dehydrating of thephosphates allowed them to come closer together. Most of thephosphates in solution cling to the water molecule that forms a protective water coat around them. It is assumed that this hydrated state is what behaves in biological systems.

They were able to stick to each other because of their water shields. The concept was confirmed by NMR experiments that probed the phosphate water shell, as well as analysis of cryo-TEM images to identify the existence of clusters.

The researchers say that the hydration shells and dynamicphosphate assembly have important implications. Matthew Helgeson said thatphosphate is used in biological systems to store and consume energy.

The discovery suggests that small 'bills' of currency can exchange with larger denominations, which may have different interactions with biochemical processes.

Many biomolecular components contain groups that may form clusters. The discovery that these phosphates can spontaneously assemble skeletons might shed some light on other biological processes such as biomineralization.

Jiaqi Lu, one of the co-lead authors, said that they achieved quantitative analysis for the assemblies after testing a range of phosphates.

This once overlooked process could be significant in the realm of cell signaling, metabolism and disease processes such as Alzheimer's disease. The team has seen and studied the assembly behavior and is now looking into the effects of pH on the assembly.

Han said that it changes the way we think about the role of phosphate groups.

In the Proceedings of the National Academy of Sciences, Joshua S. Straub and his colleagues report on the formation of dark state assemblies in common solutions ofphosphates. 10.1073/pnas.2206765 120

Journal information: Proceedings of the National Academy of Sciences